PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0254s00240.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 185aa    MW: 20391 Da    PI: 8.6616
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0254s00240.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-173079255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ++GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  Vang0254s00240.1 30 LFRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPAPEMAAKAYDVAAYCLKG 79
                      69****887.**********843...6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.79E-292988No hitNo description
PfamPF008471.7E-112979IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-303088IPR001471AP2/ERF domain
PROSITE profilePS5103223.1823087IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-213089IPR016177DNA-binding domain
SMARTSM003802.4E-353093IPR001471AP2/ERF domain
PRINTSPR003673.3E-123142IPR001471AP2/ERF domain
PRINTSPR003673.3E-126989IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MDQPPHHHSS AATTSADKPA TQRGGTRHPL FRGVRKRRWG KWVSEIREPR KKSRIWLGSF  60
PAPEMAAKAY DVAAYCLKGR KAQLNFPDEV HRLPPLPSAC TARDIQAAAA KAAHMMIVQA  120
AADAPDSPEK SSITSGCGHA ADDFWREIEL PELLHSKWWT SSADSSPWTE DDLQPQQPFT  180
TACL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-153191667ATERF1
3gcc_A7e-153191667ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492506.11e-122PREDICTED: ethylene-responsive transcription factor ERF023
SwissprotQ1ECI21e-51ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A0S3SYY61e-134A0A0S3SYY6_PHAAN; Uncharacterized protein
STRINGGLYMA16G02680.16e-91(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63752847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.12e-46ERF family protein